Synthesis of eukaryotic 5S rRNA:
In the eukaryotes, the 5S rRNA gene is also present in multiple copies (2000 in human cells and all clustered together at one chromosomal site). Unlike other eukaryotic rRNA genes, the 5S rRNA genes are transcribed through RNA polymerase III (RNA Pol III). The promoters of tRNA genes that are also transcribed through RNA Pol III contain control elements known as the A box and B box situated down- stream of the transcriptional begin site. A same condition exists for 5S rRNA genes in which the promoter has two control elements located down- stream of the transcriptional begin site, an A box and a C box shown in the figure. The C box binds transcription factor IIIA (TFIIIA) that then in turn interacts with TFIIIC to cause it to bind, a procedure that possibly also included recognition of the A box. One time TFIIIC has bound, TFIIIB binds and interacts with RNA Pol III causing which to bind also to form the transcription initiation complex. One of the three units is TATA box binding protein TBP, the transcription factor of TFIIB needed for transcription through all three eukaryotic RNA polymerases. Subsequent transcription, the 5S rRNA transcript needs no processing it migrates to the nucleolus and is recruited into ribosome assembly.
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Figure: Initiation of transcription of a 5S rRNA gene by RNA Pol III.