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Operation on file:
We concentrate first on the fgetl function that reads strings from the file one line at a time. The fgetl functions afford more control over how the data is read than the other input functions. The fgetl function reads one line of data from a file into the string; string functions can be used then to manipulate the data. As fgetl reads only one line, it generally is placed in a loop which keeps going until the end of the file is reached. The function feof returns the logical true if the end of the file has been reached. The function call feof(fid) would return the logical true when the end of the file has been reached for the file specified by fid, or logical false when not. A common algorithm for reading from a file into strings would be as shown below:
- read it into the string
- manipulate the data
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Vectorizing: In most of the cases in MATLAB, loops are not essential. As MATLAB is written specifically to work with the vectors and matrices, most operations can be completed
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Determine sequence weights for the sequences ACTA, ACTT, CGTT, and AGAT in problem 1 by using Thompson, Higgins, and Gibson method a) compute pairwise distances between sequences
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Nested Functions: We have seen that the loops can be nested, that means that one inside of the other, functions can be nested. The terminology for nested functions is that an
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