Biopathways
1. Find out pathway information about these proteins using the Human Reactome.
O00327
O14503
O75586
O95096
P01137
P01308
P06744
P08240
P12236
P20309
P24863
P29966
P49336
P52945
Q07869
Q15648
Q16526
Q9UK39
O15055
Q9BTT4
a) Pathway Analysis - ID mapping and pathway assignment
How many proteins belong to the circadian clock pathway? Name two other pathways which these proteins are involved in?
b) Pathway Analysis - Overrepresentation analysis
List the top level pathways in order of significance?
What is the total number of proteins curated in the Diabetes pathway?
How many of the above list of proteins are present in the Diabetes pathway?
c) Describe the essential features of another Reactome tool.
2. Search for O15055 and P49336 in the IntAct database, explore the interactions for this proteins.
a) List the proteins O15055 interacts with giving details of the Interaction Detection Method and Publication for one of the proteins.
b) Using P49336, click on Graph to visualise the interactions of this protein then Open this network in Cytoscape.
Copy the IntAct graph or Cytoscape network in your answer.