Create a subroutine, Database Management System

Assignment Help:

1. Create a subroutine that does the remote blast on the file protein.fa.

2. Pass that returned files from the blast to another subroutine that parses the output and sends it to an outfile. The returned values are the following: name, length, mismatches, and percent identity of the highest scoring hits.

3. You must demonstrate that you can set up an analysis pipeline using BioPerl, subroutines and Object Oriented Perl.

4. The file for processing is in Lecture10, protein.fa.


Related Discussions:- Create a subroutine

Define the unique constraints for the table client, Define the following co...

Define the following constraints for the table client. (i) BAL_DUE must be at least 1000. (ii) NAME is a unique key. (i)ALTER TABLE CLIENT ADD CONSTRAINT CLIENT_BAL_DUE_C1

What is the need of a log in a dbms, What is the need of a log in a DBMS? B...

What is the need of a log in a DBMS? Briefly describe the various types of records that are normally present in a log.            Ans:  The system log, which is generally writt

What is bcnf boyce-codd normal form, BCNF Boyce-Codd Normal Form A rel...

BCNF Boyce-Codd Normal Form A relation schema R is in BCNF if it is in 3NF and accepts an additional constraint that for every FD X A, X has to be a candidate key. If a relati

Explain the use of constraints in functional model, Explain the use of cons...

Explain the use of constraints in functional model with suitable example. A constraint shows relationship between two objects at same time, or   among various values of the sam

Cost of reading a file , A file of employee have 10,000 blocks on a cylinde...

A file of employee have 10,000 blocks on a cylinder of a disk with characteristics r=8ms and btt=0.6ms I want to know the cost of read inthe file under following conditions for a q

In e-r diagram how relationship type is represented, In E-R Diagram how rel...

In E-R Diagram how relationship type is represented ? In E-R Diagram relationship type is represented as a Diamond.

Write a query to find name from the relational algebra, Consider the relati...

Consider the relations City (city_name, state) Hotel (name, address) City_hotel (hotel_name, city_name, owner) Answer the following queries in relational algebra (i) Find

Define the basic operations of the relational algebra, Define the basic ope...

Define the basic operations of the relational algebra?     Ans: Basic operators of relational algebra are: 1. Union (∪) - Selects tuples which are in either P or Q or in bot

Write Your Message!

Captcha
Free Assignment Quote

Assured A++ Grade

Get guaranteed satisfaction & time on delivery in every assignment order you paid with us! We ensure premium quality solution document along with free turntin report!

All rights reserved! Copyrights ©2019-2020 ExpertsMind IT Educational Pvt Ltd