Create a subroutine, Database Management System

Assignment Help:

1. Create a subroutine that does the remote blast on the file protein.fa.

2. Pass that returned files from the blast to another subroutine that parses the output and sends it to an outfile. The returned values are the following: name, length, mismatches, and percent identity of the highest scoring hits.

3. You must demonstrate that you can set up an analysis pipeline using BioPerl, subroutines and Object Oriented Perl.

4. The file for processing is in Lecture10, protein.fa.


Related Discussions:- Create a subroutine

Hashed file organisation, Hashed File Organisation Hashing is the most ...

Hashed File Organisation Hashing is the most common form of purely random access to a database or file. It is also used to access columns that do not have an index as an optimi

What is odbc and what is its function, Question: (a) What is ODBC and w...

Question: (a) What is ODBC and what is its function? (b) What is Web application server, and how does it work from a database perspective? (c) What does e-commerce mean

What are the different integrity constraints in rdbms, What are the differe...

What are the different integrity constraints in RDBMS? The various integrity constraints in RDBMS are as: Primary Key: primary key is a grouping of one or more attributes

Explain the timestamps for read operations, Timestamps For Read operations:...

Timestamps For Read operations: If TS (T) If TS (T) >= W-timestamp (Q), then the transaction T is trying to read a value of data item Q which has been written and committed

A weak entity set and its identifying relationship, Q.  Define a weak entit...

Q.  Define a weak entity set and its identifying relationship. List the necessary conditions for a meaningful identifying relationship set of a weak entity set.    Entity is a t

What is a name, What is a Name? A user-supplied name is used for identi...

What is a Name? A user-supplied name is used for identity. This form of identity is used for files in file systems. The user gives every file a name that uniquely identifies it

Discuss difference between drop table r and delete from r, Discuss The diff...

Discuss The difference between drop table R and delete from R.  DROP TABLE command deletes all the records with the table definition. This command will automatically committed

What are the drawbacks of file oriented system in details, What are the dr...

What are the drawbacks of File Oriented System in details?

Structure of client server systems, Structure of Client Server Systems: In ...

Structure of Client Server Systems: In client/server architecture, clients show users who require services while servers give services. Both client and server are a combination of

Why do so various organizations use mysql, Why do so various organizations ...

Why do so various organizations use MySQL? Advantages: Open source Highly efficient Offers a high scalability in terms of size and connectivity. Highly prote

Write Your Message!

Captcha
Free Assignment Quote

Assured A++ Grade

Get guaranteed satisfaction & time on delivery in every assignment order you paid with us! We ensure premium quality solution document along with free turntin report!

All rights reserved! Copyrights ©2019-2020 ExpertsMind IT Educational Pvt Ltd