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1. Explain the four categories of amino acid side chains. What types of interactions are the members of each of these categories likely to make?
2. Outline the four levels of protein structure, giving a specific example of each.
3. Describe the geometric features of the common secondary structure, the ? helix. Why is this structure especially common? What are the weak bonds that stabilize the ? helix?
4. You treat a protein with the denaturant urea. For each interaction or bond below, state if the interaction or bond is disrupted by the urea treatment.
2
a. Ionic bonds
b. Hydrogen bonds
c. Disulfide binds
d. Peptide bonds
e. van der Waals interactions
5. How does denaturation affect a protein’s primary, secondary, tertiary, and quaternary structures?
6. Describe the role of water in protein structure formation.
Protein classification schemes
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Though plants, fungi, and prokaryotes all have cell walls, we classify them under different taxonomic units. Which of the observations below comes closest to explaining the basis for placing these organisms in different taxa.
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Cellulose can provide a widely available and cheap form of glucose, but humans cannot digest it.
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Water at room temperature is placed in flask connected through rubber tubing to a vacuum pump and the pump is turned on.
Assume you have a protein solution of concentration 3 M. You require to make a series of six dilutions of 300 mM, 30 mM, 3 mM, 300 mu M, 30 mu M, and 3 mu M.
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