Construct a de bruijn graph using all k-mers

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Reference no: EM133275840

Question - Given the following genome: G C G C G C G C G C A G A G A G A G

1. Construct a De Bruijn graph using all k-mers from the sequence, with k = 4.

2. Construct the same graph, but with k=8.

3. Come up with a short (<15 bp) genome sequence and a k value that would result in multiple possible assemblies using the DBG algorithm. Show the original sequence, graph, and all valid/possible sequence reconstructions. Explain why your sequence has this property.

Reference no: EM133275840

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