Calculate the proportion polymorphic

Reference no: EM1387646

Information demonstrate below are SNP genotypes of Guinea hogs from Kizzi Roberts' research project. In each cell "1" codes for one homozygote (TT for example), "-1" for the other homozygote (AA for example), and "0" for a heterozygote (AT for example). A "u" means that the genotyping reaction failed and the data are missing.

a. Calculate the proportion polymorphic and average heterozygosity for the population.

b. The Identify the four pigs you would keep for breeding if you had the objective of maximizing genetic variation in the next generation and describe the criteria that you used for making selection decisions.

Pig SNP:	A9	A14	A21	A22	A46	A47	A87	A112	A120	A131	A133	A134	A172	A188	A195
Wart Side Sow	-1	-1	1	1	1	-1	-1	1	-1	1	-1	1	-1	-1	-1
Old Stiff Boar	-1	-1	1	1	1	-1	-1	1	-1	1	-1	1	-1	-1	-1
Houdini	0	-1	0	1	0	0	0	0	-1	1	0	0	0	0	0
Seymour A	0	-1	0	1	1	-1	-1	0	0	1	-1	1	-1	-1	-1
Rose DNC	0	-1	1	1	1	-1	-1	1	-1	1	-1	1	-1	-1	-1
DNC Junior	-1	-1	0	1	1	-1	-1	0	0	1	-1	1	-1	-1	-1
Setty Lilly	-1	-1	1	1	1	-1	-1	1	-1	1	-1	1	-1	-1	-1
Seymour B	0	-1	0	1	1	-1	-1	0	0	1	-1	1	-1	-1	-1
Samson	1	-1	1	0	0	-1	-1	0	-1	1	0	1	-1	0	-1
Killian	-1	-1	1	1	1	-1	-1	1	-1	1	-1	1	-1	-1	-1
Barnett	0	-1	1	1	1	-1	-1	1	-1	1	-1	1	-1	-1	-1

Reference no: EM1387646

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