Annotate a genome locally on ubuntu

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Reference no: EM132290186

Using Ubuntu to download bacteria fasta file and annotating it using GALES on Ubuntu to generate GFF3 annotating file

GALES is Genomic Annotation Logic and Execution System (GALES): Annotate a genome locally on Ubuntu

Please use Ubuntu only to do the following steps:

1- Download FASTA file

2- Follow steps in the free source GALES README that found on GitHub project page to generate annotation

3- Use the prok-cheetah pipeline within GALES

4- These steps will download lots of reference data

5- Use HMMer3

6- Gzip and get the resulting GFF3 annotation file

on Ubuntu - It is downloading the above bacteria fasta file and annotating it using GALES (using these 2 options: prok-cheetah and HMMer3) on Ubuntu

Gzip and get the resulting GFF3 annotation file

Attachment:- Genomic Annotation Logic and Execution System.rar

Verified Expert

Its an UBUNTU assignment where we use GALES. GALES is Genomic Annotation Logic and Execution System (GALES). We Annotate a genome locally on Ubuntu and simulation for FASTA. All the steps have been properly followed and report is made along with the proper screenshot of the program.

Reference no: EM132290186

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len2290186

4/22/2019 12:40:53 AM

This is an easy job just please follow the steps in the attached word document it is just using Ubuntu to download bacteria fasta file and annotating it using GALES on Ubuntu to generate GFF3 annotating file that you need to gzip

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